SMBM 2016
Semantic Mining in Biomedicine

Table of Contents

• Preface
  
  

Keynote Talks

• Translational Text Mining (invited talk) 1
  Ulf Leser
• Structuring Knowledge on Human Diseases: Challenges and Opportunities (invited talk) 2
  Laura Furlong

Long Papers

• Performance of Gene Name Recognition Tools on Patents 3-10
  Maryam Habibi, David Luis Wiegandt, Florian Schmedding, Ulf Leser
• Using a Hybrid Approach for Entity Recognition in the Biomedical Domain 11-19
  Marco Basaldella, Lenz Furrer, Nico Colic, Tilia Ellendorff, Carlo Tasso, Fabio Rinaldi
• Simplifying Drug Package Leaflets 20-28
  Isabel Segura Bedmar, Luis Núñez-Gómez, Paloma Martínez Fernández, Maribel Quiroz
• Early Detection of Acute Kidney Injury with Bayesian Networks 29-36
  Harry Freitas Da Cruz, Bastien Grasnick, Henriette Dinger, Frank Bier, Christoph Meinel
• Disease Named Entity Recognition Using Conditional Random Fields 37-41
  Thomas Hahn, Hidayat Rahman, Richard Segall

Short Papers

• Exploiting Tree Kernels for High Performance Chemical Induced Disease Relation Extraction 42-47
  Nagesh Panyam Chandrasekarasastry, Karin Verspoor, Trevor Cohn, Ramamohanarao Kotagiri
• Text Mining and Expert Curation to Develop a Database on Psychiatric Diseases and their Genes 48-55
  Alba Gutiérrez Sacristán, Álex Bravo, Marta Portero, Olga Valverde, Antonio Armario, M.C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, M.A. Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Perez, Marta Rodríguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warnault, Ferran Sanz, Laura I. Furlong
• Annotation Process, Guidelines and Text Corpus of Small Non-Coding RNA Molecules: the MiNCor for MicroRNA Annotations 56-63
  Jose Camilla Sammartino, Martin Krallinger, Alfonso Valencia
• Marker Words for Negation and Speculation in Health Records and Consumer Reviews 64-69
  Maria Skeppstedt, Carita Paradis, Andreas Kerren
• Diagnostic Free Text Analysis in Biobanks with CRIP.CodEx: Automated Matching of Classifications 70-74
  Oliver Gros, Reinhard Thasler
• A Curation Pipeline and Web-Services for PDF Documents 75-79
  André Santos, Sérgio Matos, David Campos, José Luís Oliveira

Demo Papers

• TextAI: Enhancing TextAE with Intelligent Annotation Support 80-84
  Maximilian Grundke, Johannes Jasper, Mariya Perchyk, Jan Philipp Sachse, Ralf Krestel, Mariana Neves
• A Light-weight & Robust System for Clinical Concept Disambiguation 85-89
  Dirk Weissenborn, Roland Roller, Feiyu Xu, Hans Uszkoreit, Enrique Garcia Perez