SWAT4HCLS 2023 Semantic Web Applications and Tools for Health Care and Life Sciences 2023
- Event
- 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023)
- Location
- Basel, Switzerland
- Date
- to
Table of Contents
- Preface
Summary: There were 22 papers submitted for peer-review to this workshop. Out of these, 14 papers were accepted for this volume.
- Using BPMN for medical guidelines that integrate with FHIR-RDF
- Pages
- 1–10
- Privacy-Preserving Dashboard for F.A.I.R Head and Neck Cancer data supporting multi-centered
collaborations
- Pages
- 11–21
- Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions
- Pages
- 22–31
- Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived
from Biomedical Literature in the PubChemRDF
- Pages
- 32–41
- FSO: Food Safety Monitoring Ontology
- Pages
- 42–51
- Attention for Multi-Ontology Concept Recognition
- Pages
- 52–61
- BiodivBERT: a Pre-Trained Language Model for the Biodiversity Domain
- Pages
- 62–71
- FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results
- Pages
- 72–81
Short Papers
- Predicting missing annotations in Gene Ontology with Knowledge Graph Embeddings and
True Path Rule
- Pages
- 82–86
- Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for
rare genetic diseases
- Pages
- 87–91
- Fine-Grained Named Entities for Corona News
- Pages
- 92–97
- Document-to-document relevance assessment for TREC Genomics Track 2005
- Pages
- 98–101
- Decentralised semantics in distributed health data ecosystems: Harmonising quantitative
data from medical devices for improved insights-driven applications
- Pages
- 102–106
- Surveyed common data access policies preferences amongst European Reference Networks
- Pages
- 107–111
Poster Papers
- Towards a Systems Pharmacology Ontology: the use of state-machines paradigm
- Pages
- 112–113
- The FAIR Data Point Populator: collaborative FAIRification and population of FAIR
Data Points
- Pages
- 114–115
- Making expert curated knowledge graphs FAIR
- Pages
- 116–117
- Towards the use of semantic rules to prioritize patient input requests in ePRO systems
- Pages
- 118–119
- To build densely connected Web of RDF data
- Pages
- 120–121
- Contributions to the reuse and reproducibility of computational biology models
- Pages
- 122–123
- Comparative analysis of protein function text-based embeddings and their applicability
to prediction tasks
- Pages
- 124–125
- Genome Variation Ontology for annotation of complex structural variations
- Pages
- 126–127
- Developing a semantic event search engine for biomedical events
- Pages
- 128–129
- FAIRification and semantic modelling for Duchenne and Becker Muscular Dystrophy rare
diseases
- Pages
- 130–132
- MeDaX project plan: How to sustainably improve biomedical (research) data management
- Pages
- 133–134
- Towards Semantic Modeling of Patient Trajectories for Rehabilitation of Osteoarthritis
- Pages
- 135–136
- NFDI4BIOIMAGE: Perspective for a national bioimaging standard
- Pages
- 137–138
- First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center
for Diabetes Research
- Pages
- 139–140
- An ontology for Age-Related Macular Degeneration using ophthalmologists and language
models
- Pages
- 141–142
- A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench
- Pages
- 143–144
- A metadata analysis for machine-actionable Software Management Plans
- Pages
- 145–146
- Structured review on Huntington's disease iron hypothesis
- Pages
- 147–148
- Text mining genome-wide association study literature
- Pages
- 149–150
- Updating the CEMO ontology for future epidemiological challenges
- Pages
- 151–152
- Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of
Graph2VR
- Pages
- 153–154
- Multilabel-classification task for Medline abstracts
- Pages
- 155–156
- Experiences from compiling a FAIR survey in the German Network University Medicine
- Pages
- 157–158
- OntoClue, a framework to compare vector-based approaches for document relatedness
using the RELISH corpus
- Pages
- 159–160
- Text-based phenotyping with Semantic Deep Learning: setting up experiments for women’s
health
- Pages
- 161–162
- An Explainable Intervention Prediction for Trauma Patients
- Pages
- 163–164
Demonstrations
- FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge
Graphs
- Pages
- 165–166
- AgroLD: a Knowledge Graph for the Plant Sciences
- Pages
- 167–168
- Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated
Learning
- Pages
- 169–170
- Managing food and microbiome studies data using Fairspace, a flexible and FAIR data
management platform
- Pages
- 171–172
Data-In-Use Papers
- Towards predicting essential proteins via federated SPARQL queries
- Pages
- 173–174
- A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human
proteins highly expressed in the brain and conserved in Drosophila melanogaster
- Pages
- 175–176
- Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource
and disease datasets
- Pages
- 177–178
- Linking glycan and protein data
- Pages
- 179–180
- UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands
- Pages
- 181–183
We offer a BibTeX file for citing papers of this workshop from LaTeX.