| Vol-2275 urn:nbn:de:0074-2275-1 Copyright © 2018 for the individual papers by the papers' authors. Copying permitted for private and academic purposes. This volume is published and copyrighted by its editors.

# SWAT4LS 2018
Semantic Web Applications and Tools for Health Care and Life Sciences

### Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences (SWAT4HCLS 2018)

### Antwerp, Belgium, December 3-6, 2018.

Edited by

### Christopher J. O. Baker *
Andra Waagmeester **
Andrea Splendiani ***
Oya Deniz Beyan ****
M. Scott Marshall *****

* University of New Brunswick and IPSNP Computing Inc., New Brunswick, Canada
** Micelio, 2180 Ekeren - Antwerp, Belgium
*** Novartis NIBR, Switzerland
**** RWTH Aachen University Informatik 5, Germany
***** Harver,1019 GW, Amsterdam, the Netherlands

## Table of Contents

- Preface

### Long papers

- Using semantic technologies to enhance metadata submissions to public repositories in biomedicine.
  Attila L. Egyedi, Martin J. O’Connor, Marcos Martínez-Romero, Debra Willrett,, Josef Hardi, John Graybeal, Mark A. Musen
- The Story of an experiment: a provenance-based semantic approach towards research reproducibility
  Sheeba Samuel, Kathrin Groeneveld, Frank Taubert, Daniel Walther, Tom Kache, Teresa Langenstück, Birgitta König-Ries, H. Martin Bücker, Christoph Biskup
- DSAP: Data Sharing Agreement Privacy Ontology.
  Mingyuan Li, Reza Samavi
- A model for capturing provenance of assertions about chemical substances
  Kody Moodley, Amrapali Zaveri, Chunlei Wu, Michel Dumontier
- Design of a framework to support reuse of Open Data about agriculture
  Alec Gordon, Mohammad Sadnan Al Manir, Brandon Smith, Amir Hossein Rezaie, Christopher Baker
- Ontology-driven metadata enrichment for genomic datasets
  Anna Bernasconi, Arif Canakoglu, Andrea Colombo, Stefano Ceri
- Sparklis over PEGASE knowledge graph: a new tool for pharmacovigilance
  Carlos Bobed, Laura Douze, Sébastien Ferré, Romaric Marcilly
- A distributed analytics platform to execute FHIR based phenotyping algorithms
  Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker, Oya Beyan
- A semantic data integration methodology for translational neurodegenerative disease research
  Sumit Madan, Maksims Fiosins, Stefan Bonn, Juliane Fluck
- Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach.
  Gabin Personeni, Marie-Dominique Devignes, Malika Smail-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
- Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data
  Remzi Çelebi, Erkan Yaşar, Hüseyin Uyar, Özgür Gümüş, Oguz Dikenelli, Michel Dumontier
- Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings
  Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V Gkoutos, Michel Dumontier, Robert Hoehndorf
- Data2Services: enabling automated conversion of data to services
  Vincent Emonet, Amrapali Zaveri, Alexander Malic Andreea Grigoriu Michel Dumontier
- Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner use case
  Marco Brandizi, Ajit Singh, Keywan Hassani-Pak

### Short papers

- Wikidata as an intuitive resource towards semantic data modeling in data FAIRification
  Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Greg Stupp, Lynn Schriml, Mark Thompson, Andrew I. Su, Marco Roos
- Increasing the nanopublication recall with a BridgeDb identifier mapping service
  Egon Willighagen

2018-12-12: submitted by Andra Waagmeester, metadata incl. bibliographic data published under Creative Commons CC0
2018-12-13: published on CEUR-WS.org |valid HTML5|