# SWAT4HCLS 2019 Semantic Web Applications and Tools for Health Care and Life Sciences

Event
  12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences
Location
  Edinburgh, Scotland
Date
  December 10th to 11th, 2019

Edited by
  Ronald Cornet1
  Andra Waagmeester2

- 1Amsterdam UMC, University of Amsterdam, The Netherlands
- 2Micelio, Antwerp, Belgium

## Table of Contents

1. Preface
2. Enhancing the Maintainability of the Bio2RDF Project Using Declarative Mappings
   Pages
     1–10
   Authors
     Ana Iglesias-Molina
     David Chaves-Fraga
     Freddy Priyatna
     Oscar Corcho
3. Suggesting Reasonable Phenotypes to Clinicians
   Pages
     11–19
   Authors
     Laura Slaughter
     Dag Hovland
4. A FHIR-to-RDF Converter
   Pages
     20–25
   Authors
     Gerhard Kober
     Adrian Paschke
5. A Framework for Representing Clinical Research in FHIR
   Pages
     26–35
   Authors
     Hugo Leroux
     Christine K. Denney
     Smita Hastak
     Hugh Glover
6. Reconciling Author Names in Taxonomic and Publication Databases
   Pages
     36–43
   Authors
     Roderic D. M. Page
7. On Bringing Bioimaging Data into the Open (World)
   Pages
     44–53
   Authors
     Josh Moore
     Norio Kobayashi
     Susanne Kunis
     Shuichi Onami
     Jason R. Swedlow
8. Making Clinical Trials available at the Point of Care - connecting Clinical Trials to Electronic Health Records using SNOMED CT and HL7 InfoButton Standards
   Pages
     54–63
   Authors
     Jay Kola
     Wai Keong Wong
     Bhavana Buddala
9. A Blueprint for Semantically Lifting Field Trial Data: Enabling Exploration using Knowledge Graphs
   Pages
     64–73
   Authors
     Daniel Burkow
     Jens Hollunder
     Julian Heinrich
     Fuad Abdallah
     Miguel A. Rojas-Macias
     Cord Wiljes
     Philipp Cimiano
     Philipp Senger
10. Documentation Gap in Ontology Creation: Insights into the Reality of Knowledge Formalization in a Life Science Company
    Pages
      74–83
    Authors
      Marius Michaelis
      Olga Streibel
11. Partitioning of BioPortal Ontologies: An Empirical Study
    Pages
      84–93
    Authors
      Alsayed Algergawy
      Birgitta König-Ries
12. Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR
    Pages
      94–101
    Authors
      Johan van Soest
      Ananya Choudhury
      Nikhil Gaikwad
      Matthijs Sloep
      Michel Dumontier
      Andre Dekker
13. FAIRness of openEHR Archetypes and Templates
    Pages
      102–111
    Authors
      Caroline Bönisch
      Anneka Sargeant
      Antje Wulff
      Marcel Parciak
      Christian R. Bauer
      Ulrich Sax
14. A Working Semantic Model for the Integration of Occupation, Function and Health
    Pages
      112–121
    Authors
      Anil Adisesh
      Hongchang Bao
      Mohammad Sadnan Al Manir
      Christopher J. O. Baker
15. FAIR Quantitative Imaging in Oncology: how Semantic Web and Ontologies will support Reproducible Science
    Pages
      122–126
    Authors
      Alberto Traverso
      Zhenwei Shi
      Leonard Wee
      Andre Dekker
16. Realizing FAIR Data in an Enterprise Environment
    Pages
      127–130
    Authors
      Melanie Hackl
      Goekhan Coskun
17. Semi-Automated Data-Driven Methods to Support Ontology Development: A Case Study on a Rehabilitation Therapy Ontology
    Pages
      131–132
    Authors
      Mohammad K. Halawani
      Rob Forsyth
      Phillip Lord
18. Mapping Subjects and Domains across the Humanities and Natural Sciences in FAIRsharing
    Pages
      133–134
    Authors
      Allyson L. Lister
      Peter McQuilton
      Milo Thurston
      Susanna-Assunta Sansone
19. Babylon Health's Medical Knowledge Graph: Why, What, and How
    Pages
      135–136
    Authors
      Claudia Schulz
      Damir Juric
      Jetendr Shamdasani
      Martin Coste
      Szymon Wartak
      Aleksandar Savkov
      Nils Hammerla
      Mohammad Khodadadi
20. Implementing FAIR Principles in InterMine
    Pages
      137–138
    Authors
      Daniela Butano
      Justin Clark-Casey
      Sergio Contrino
      Josh Heimbach
      Rachel Lyne
      Kevin Herald Reierskog
      Julie Sullivan
      Yo Yehudi
      Gos Micklem
21. MOLGENIS Catalogue - towards a Unified Application for Data and Sample Catalogues
    Pages
      139–140
    Authors
      Alexander Kellmann
      David van Enckevort
      Marije van der Geest
      Aneas Hodselmans
      Morris A. Swertz
22. Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure
    Pages
      141–142
    Authors
      Chang Sun
      Vincent Emonet
      Johan van Soest
      Annemarie Koster
      Andre Dekker
      Michel Dumontier
23. Publishing Linked and FAIR-compliant Radiomics Data in Radiation Oncology via Ontologies and Semantic Web Techniques
    Pages
      143–144
    Authors
      Alberto Traverso
      Martin Vallières
      Johan van Soest
      Leonard Wee
      Olivier Morin
      Andre Dekker
24. Ontology Mapping for the Laboratory Analytics Domain
    Pages
      145–146
    Authors
      Ian Harrow
      Thomas Liener
      Ernesto Jimenez-Ruiz
25. Semantic Integration of Intrinsically Disordered Proteins and Existing DBs
    Pages
      147–148
    Authors
      Atsuko Yamaguchi
      Hideki Hatanaka
      Satoshi Fukuchi
      Motonori Ota
26. OME Core Ontology: An OWL-based Life Science Imaging Data Model
    Pages
      149–150
    Authors
      Norio Kobayashi
      Josh Moore
      Shuichi Onami
      Jason R. Swedlow
27. UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences
    Pages
      151–152
    Authors
      Norio Kobayashi
      Yasunori Yamamoto
      Atsuko Yamaguchi
28. The 4DN-OME Ontology: an OME-OWL Extension with Emphasis on Usability, Minimum Information Guidelines and Quality Control for Super-resolution Fluorescence Microscopy
    Pages
      153–154
    Authors
      Mathias Hammer
      Alessandro Rigano
      Farzin Farzam
      Maximiliaan Huisman
      David Grunwald
      Caterina Strambio-De-Castillia
29. A Modular Approach to Knowledge Graphs and FAIR Data in Healthcare
    Pages
      155–156
    Authors
      Matthijs Sloep
      Petros Kalendralis
      Johan van Soest
      Rianne Fijten
30. Finding RDF Data you need by Umaka Suite
    Pages
      157–158
    Authors
      Yasunori Yamamoto
      Atsuko Yamaguchi
31. Species Association Knowledge Graph Construction - A Demo Paper
    Pages
      159–160
    Authors
      Dina Sharafeldeen
      Alsayed Algergawy
      Birgitta König-Ries
32. Med2RDF: Semantic Biomedical Knowledge-base and APIs for the Clinical Genome Medicine
    Pages
      161–162
    Authors
      Mayumi Kamada
      Toshiaki Katayama
      Shuichi Kawashima
      Ryosuke Kojima
      Masahiko Nakatsui
      Yasushi Okuno
33. MetaStanza: Generic WebComponents Widgets for Visualizing SPARQL Results on the Web
    Pages
      163–164
    Authors
      Toshiaki Katayama
34. Integrated Growth Media Database by Standardizing Ingredient Information
    Pages
      165–166
    Authors
      Shuichi Kawashima
      Toshiaki Katayama
      Yuki Moriya
      Shinobu Okamoto
      Yasunori Yamamoto
      Susumu Goto
35. SemanticGenomeGraphs
    Pages
      167–168
    Authors
      Simon Heumos
      Jerven Bolleman
36. Network Building with Cytoscape App Queries to the BioGateway 3.0 Triple Store
    Pages
      169–170
    Authors
      Stian Holmås
      Vladimir Mironov
      Martin Kuiper

We offer a BibTeX file for citing papers of this workshop from LaTeX.