@comment{It is strongly recommended to use BibLaTeX for these entries}

@inproceedings{:SWAT4HCLS2023,
title = {Preface},
url = {http://ceur-ws.org/Vol-3415/\#preface},
crossref = {SWAT4HCLS2023},
}

@inproceedings{KoberEtAl:SWAT4HCLS2023,
title = {Using {BPMN} for medical guidelines that integrate with {FHIR-RDF}},
author = {Gerhard Kober and Livio Robaldo and Adrian Paschke},
pages = {1--10},
url = {http://ceur-ws.org/Vol-3415/\#paper-1},
crossref = {SWAT4HCLS2023},
}

@inproceedings{GouthamchandEtAl:SWAT4HCLS2023,
title = {Privacy-Preserving Dashboard for {F.A.I.R} Head and Neck Cancer data supporting multi-centered collaborations},
author = {Varsha Gouthamchand and Ananya Choudhury and Frank Hoebers and Frederik Wesseling and Mattea Welch and Sejin Kim and Benjamin Haibe-Kains and Joanna Kazmierska and Andre Dekker and Johan Van Soest and Leonard Wee},
pages = {11--21},
url = {http://ceur-ws.org/Vol-3415/\#paper-2},
crossref = {SWAT4HCLS2023},
}

@inproceedings{OzkanEtAl:SWAT4HCLS2023,
title = {Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions},
author = {Elif Ozkan and Remzi Celebi and Arif Yilmaz and Vincent Emonet and Michel Dumontier},
pages = {22--31},
url = {http://ceur-ws.org/Vol-3415/\#paper-3},
crossref = {SWAT4HCLS2023},
}

@inproceedings{LiEtAl:SWAT4HCLS2023,
title = {{Resource Description Framework} ({RDF}) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the {PubChemRDF}},
author = {Qingliang Li and Sunghwan Kim and Leonid Zaslavsky and Tiejun Cheng and Bo Yu and Evan E. Bolton},
pages = {32--41},
url = {http://ceur-ws.org/Vol-3415/\#paper-4},
crossref = {SWAT4HCLS2023},
}

@inproceedings{YilmazEtAl:SWAT4HCLS2023,
title = {{FSO}: Food Safety Monitoring Ontology},
author = {Arif Yilmaz and Raghavendra Naidu and Christopher Brewster},
pages = {42--51},
url = {http://ceur-ws.org/Vol-3415/\#paper-5},
crossref = {SWAT4HCLS2023},
}

@inproceedings{Pigott-DixDavey:SWAT4HCLS2023,
title = {Attention for Multi-Ontology Concept Recognition},
author = {Lorc{'a}n Pigott-Dix and Robert P. Davey},
pages = {52--61},
url = {http://ceur-ws.org/Vol-3415/\#paper-6},
crossref = {SWAT4HCLS2023},
}

@inproceedings{AbdelmageedEtAl:SWAT4HCLS2023,
title = {{BiodivBERT}: a Pre-Trained Language Model for the Biodiversity Domain},
author = {Nora Abdelmageed and Felicitas L{\"o}ffler and Birgitta K{\"o}nig-Ries},
pages = {62--71},
url = {http://ceur-ws.org/Vol-3415/\#paper-7},
crossref = {SWAT4HCLS2023},
}

@inproceedings{ChenEtAl:SWAT4HCLS2023,
title = {{FAIR} Functional Enrichment: Assessing and Modelling Provenance in Omics Results},
author = {Yi Chen and Fons J. Verbeek and Katherine J. Wolstencroft},
pages = {72--81},
url = {http://ceur-ws.org/Vol-3415/\#paper-8},
crossref = {SWAT4HCLS2023},
}

@inproceedings{ErtenEtAl:SWAT4HCLS2023,
title = {Predicting missing annotations in {Gene Ontology} with {Knowledge Graph Embeddings} and {True Path Rule}},
author = {{\"O}zge Erten and Shervin Mehryar and Remzi {\c C}elebi and Christopher Brewster},
pages = {82--86},
url = {http://ceur-ws.org/Vol-3415/\#paper-9},
crossref = {SWAT4HCLS2023},
}

@inproceedings{ShinEtAl:SWAT4HCLS2023,
title = {Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases},
author = {Jae-Moon Shin and Toyofumi Fujiwara and Atsuko Yamaguchi},
pages = {87--91},
url = {http://ceur-ws.org/Vol-3415/\#paper-10},
crossref = {SWAT4HCLS2023},
}

@inproceedings{EfeogluPaschke:SWAT4HCLS2023,
title = {Fine-Grained Named Entities for Corona News},
author = {Sefika Efeoglu and Adrian Paschke},
pages = {92--97},
url = {http://ceur-ws.org/Vol-3415/\#paper-11},
crossref = {SWAT4HCLS2023},
}

@inproceedings{GiraldoEtAl:SWAT4HCLS2023:a,
title = {Document-to-document relevance assessment for {TREC Genomics Track 2005}},
author = {Olga Giraldo and Mar{\'i}a Fernanda Cadena and Andrea Robayo-Gama and Dhwani Solanki and Tim Fellerhoff and Lukas Geist and Rohitha Ravinder and Muhammad Talha and Dietrich Rebholz-Schuhmann and Leyla Jael Castro},
pages = {98--101},
url = {http://ceur-ws.org/Vol-3415/\#paper-12},
crossref = {SWAT4HCLS2023},
}

@inproceedings{KnowlesEtAl:SWAT4HCLS2023,
title = {Decentralised semantics in distributed health data ecosystems: Harmonising quantitative data from medical devices for improved insights-driven applications},
author = {Paul Knowles and Robert Mitwicki and Michal Pietrus},
pages = {102--106},
url = {http://ceur-ws.org/Vol-3415/\#paper-13},
crossref = {SWAT4HCLS2023},
}

@inproceedings{CamaraEtAl:SWAT4HCLS2023,
title = {Surveyed common data access policies preferences amongst {European Reference Networks}},
author = {Alberto C{'a}mara and Nirupama Benis and C{'e}sar H. Bernab{'e} and In{'e}s de Oliveira Coelho and Cl{'e}mence M.A. Le Cornec and Aylin Demir and Bruna Dos Santos Vieira and Jose Antonio Ram{\'i}rez and K. Joeri van der Velde and Shuxin Zhang and Ronald Cornet and Annika Jacobsen and Marco Roos and Franz Schaefer and Morris A. Swertz and Mark D. Wilkinson},
pages = {107--111},
url = {http://ceur-ws.org/Vol-3415/\#paper-14},
crossref = {SWAT4HCLS2023},
}

@inproceedings{ChytasEtAl:SWAT4HCLS2023,
title = {Towards a {Systems Pharmacology Ontology}: the use of state-machines paradigm},
author = {Achilleas Chytas and Nick Bassiliades and Ioannis Vlahavas and Pantelis Natsiavas},
pages = {112--113},
url = {http://ceur-ws.org/Vol-3415/\#paper-15},
crossref = {SWAT4HCLS2023},
}

@inproceedings{WijnbergenEtAl:SWAT4HCLS2023,
title = {The {FAIR Data Point Populator}: collaborative {FAIRification} and population of {FAIR Data Points}},
author = {Daphne Wijnbergen and Rajaram Kaliyaperumal and Marco Roos and Eleni Mina},
pages = {114--115},
url = {http://ceur-ws.org/Vol-3415/\#paper-16},
crossref = {SWAT4HCLS2023},
}

@inproceedings{BollemanEtAl:SWAT4HCLS2023,
title = {Making expert curated knowledge graphs {FAIR}},
author = {Jerven Bolleman and Alan Bridge and Nicole Redaschi and UniProt Consortium},
pages = {116--117},
url = {http://ceur-ws.org/Vol-3415/\#paper-17},
crossref = {SWAT4HCLS2023},
}

@inproceedings{NatsiavasBonotis:SWAT4HCLS2023,
title = {Towards the use of semantic rules to prioritize patient input requests in {ePRO} systems},
author = {Pantelis Natsiavas and Panos Bonotis},
pages = {118--119},
url = {http://ceur-ws.org/Vol-3415/\#paper-18},
crossref = {SWAT4HCLS2023},
}

@inproceedings{YamamotoFujisawa:SWAT4HCLS2023,
title = {To build densely connected Web of {RDF} data},
author = {Yasunori Yamamoto and Takatomo Fujisawa},
pages = {120--121},
url = {http://ceur-ws.org/Vol-3415/\#paper-19},
crossref = {SWAT4HCLS2023},
}

@inproceedings{HenkelWaltemath:SWAT4HCLS2023,
title = {Contributions to the reuse and reproducibility of computational biology models},
author = {Ron Henkel and Dagmar Waltemath},
pages = {122--123},
url = {http://ceur-ws.org/Vol-3415/\#paper-20},
crossref = {SWAT4HCLS2023},
}

@inproceedings{RavinderEtAl:SWAT4HCLS2023:a,
title = {Comparative analysis of protein function text-based embeddings and their applicability to prediction tasks},
author = {Rohitha Ravinder and Leyla Jael Castro and Martin Hofmann-Apitius and Dietrich Rebholz-Schuhmann},
pages = {124--125},
url = {http://ceur-ws.org/Vol-3415/\#paper-21},
crossref = {SWAT4HCLS2023},
}

@inproceedings{KawashimaEtAl:SWAT4HCLS2023,
title = {Genome Variation Ontology for annotation of complex structural variations},
author = {Shuichi Kawashima and Takatomo Fujisawa and Toshiaki Katayama},
pages = {126--127},
url = {http://ceur-ws.org/Vol-3415/\#paper-22},
crossref = {SWAT4HCLS2023},
}

@inproceedings{ReyesKobayashi:SWAT4HCLS2023,
title = {Developing a semantic event search engine for biomedical events},
author = {Julio Cesar Rangel Reyes and Norio Kobayashi},
pages = {128--129},
url = {http://ceur-ws.org/Vol-3415/\#paper-23},
crossref = {SWAT4HCLS2023},
}

@inproceedings{Perdomo-QuinteiroEtAl:SWAT4HCLS2023,
title = {{FAIRification} and semantic modelling for {Duchenne} and {Becker Muscular Dystrophy} rare diseases},
author = {Pablo Perdomo-Quinteiro and Sergiu Siminiuc and Paraskevi Sakellariou and Marco Roos and Pietro Spitali and N{\'u}ria Queralt-Rosinach},
pages = {130--132},
url = {http://ceur-ws.org/Vol-3415/\#paper-24},
crossref = {SWAT4HCLS2023},
}

@inproceedings{WodkeEtAl:SWAT4HCLS2023,
title = {{MeDaX} project plan: How to sustainably improve biomedical (research) data management},
author = {Judith A .H. Wodke and Ron Henkel and Dagmar Waltemath},
pages = {133--134},
url = {http://ceur-ws.org/Vol-3415/\#paper-25},
crossref = {SWAT4HCLS2023},
}

@inproceedings{ManzoEtAl:SWAT4HCLS2023,
title = {Towards Semantic Modeling of Patient Trajectories for Rehabilitation of Osteoarthritis},
author = {Gaetano Manzo and Benjamin Pocklington and Yvan Pannatier and Cathy Gay and Anjani Dhrangadhariya and Sophie Carrard and Roger Hilfiker and Jean-Paul Calbimonte},
pages = {135--136},
url = {http://ceur-ws.org/Vol-3415/\#paper-26},
crossref = {SWAT4HCLS2023},
}

@inproceedings{MooreKunis:SWAT4HCLS2023,
title = {{NFDI4BIOIMAGE}: Perspective for a national bioimaging standard},
author = {Josh Moore and Susanne Kunis},
pages = {137--138},
url = {http://ceur-ws.org/Vol-3415/\#paper-27},
crossref = {SWAT4HCLS2023},
}

@inproceedings{InauEtAl:SWAT4HCLS2023,
title = {First Steps Towards the {FAIRification} of the {DZD CORE DATASET} at the {German Center for Diabetes Research}},
author = {Esther Thea Inau and Angela Dedie and Ivona Anastasova and Andreas Birkenfeld and Brigitte Fr{\"o}hlich and Martin Hrab{\v e} de Angelis and Michael Roden and Renate Schick and Yaroslav Zdravomyslov and Atinkut Zeleke and Dagmar Waltemath and Martin Preusse},
pages = {139--140},
url = {http://ceur-ws.org/Vol-3415/\#paper-28},
crossref = {SWAT4HCLS2023},
}

@inproceedings{GrozaEtAl:SWAT4HCLS2023,
title = {An ontology for {Age-Related Macular Degeneration} using ophthalmologists and language models},
author = {Adrian Groza and Anca Marginean and Simona Delia Nicoara},
pages = {141--142},
url = {http://ceur-ws.org/Vol-3415/\#paper-29},
crossref = {SWAT4HCLS2023},
}

@inproceedings{LoebeEtAl:SWAT4HCLS2023,
title = {A Semantic Representation of the {NFDI4Health} Metadata Schema Utilizing the {CEDAR} Workbench},
author = {Matthias L{\"o}be and Aliaksandra Shutsko and Carsten O. Schmidt and Johannes Darms and Sophie A. I. Klopfenstein and Carina N. Vorisek and Xioaming Hu and Martin Golebiewski and Juliane Fluck},
pages = {143--144},
url = {http://ceur-ws.org/Vol-3415/\#paper-30},
crossref = {SWAT4HCLS2023},
}

@inproceedings{GiraldoEtAl:SWAT4HCLS2023:b,
title = {A metadata analysis for machine-actionable {Software Management Plans}},
author = {Olga Giraldo and Renato Alves and Dimitrios Bampalikis and Jos{'e} M. Fern{'a}ndez and Eva Martin del Pico and Fotis Psomopoulos and Nelson Qui{~n}ones and Dhwani Solanki and Allegra Via and Leyla Jael Castro},
pages = {145--146},
url = {http://ceur-ws.org/Vol-3415/\#paper-31},
crossref = {SWAT4HCLS2023},
}

@inproceedings{CremersEtAl:SWAT4HCLS2023,
title = {Structured review on {Huntington's} disease iron hypothesis},
author = {Karolis Cremers and Marco Roos and Katy Wolstencroft and Eleni Mina and N{\'u}ria Queralt-Rosinach},
pages = {147--148},
url = {http://ceur-ws.org/Vol-3415/\#paper-32},
crossref = {SWAT4HCLS2023},
}

@inproceedings{RowlandsBeck:SWAT4HCLS2023,
title = {Text mining genome-wide association study literature},
author = {Thomas Rowlands and Tim Beck},
pages = {149--150},
url = {http://ceur-ws.org/Vol-3415/\#paper-33},
crossref = {SWAT4HCLS2023},
}

@inproceedings{Queralt-RosinachEtAl:SWAT4HCLS2023,
title = {Updating the {CEMO} ontology for future epidemiological challenges},
author = {N{\'u}ria Queralt-Rosinach and Paul N. Schofield and Marco Roos and Robert Hoehndorf},
pages = {151--152},
url = {http://ceur-ws.org/Vol-3415/\#paper-34},
crossref = {SWAT4HCLS2023},
}

@inproceedings{KellmannEtAl:SWAT4HCLS2023,
title = {Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of {Graph2VR}},
author = {Alexander Kellmann and Max Postema and Joris de Keijser and Pjotr Svetachov and Becca Wilson and Esther van Enckevort and Morris A. Swertz},
pages = {153--154},
url = {http://ceur-ws.org/Vol-3415/\#paper-35},
crossref = {SWAT4HCLS2023},
}

@inproceedings{QuinonesEtAl:SWAT4HCLS2023,
title = {Multilabel-classification task for {Medline} abstracts},
author = {Nelson Qui{~n}ones and Cesar Canales and Javier Torres and Dietrich Rebholz-Schuhmann and Leyla Jael Castro and Andr{'e}s Aristiz{'a}bal},
pages = {155--156},
url = {http://ceur-ws.org/Vol-3415/\#paper-36},
crossref = {SWAT4HCLS2023},
}

@inproceedings{MichaelisEtAl:SWAT4HCLS2023,
title = {Experiences from compiling a {FAIR} survey in the {German Network University Medicine}},
author = {Lea Michaelis and Rasim Atakan Poyraz and Michael Rusongoza Muzoora and Kerstin Gierend and Alexander Bartschke and Dagmar Waltemath and Sylvia Thun},
pages = {157--158},
url = {http://ceur-ws.org/Vol-3415/\#paper-37},
crossref = {SWAT4HCLS2023},
}

@inproceedings{RavinderEtAl:SWAT4HCLS2023:b,
title = {{OntoClue}, a framework to compare vector-based approaches for document relatedness using the {RELISH} corpus},
author = {Rohitha Ravinder and Tim Fellerhoff and Vishnu Dadi and Lukas Geist and Guillermo Rocamora and Muhammad Talha and Dietrich Rebholz-Schuhmann and Leyla Jael Castro},
pages = {159--160},
url = {http://ceur-ws.org/Vol-3415/\#paper-38},
crossref = {SWAT4HCLS2023},
}

@inproceedings{CasteleiroEtAl:SWAT4HCLS2023,
title = {Text-based phenotyping with {Semantic Deep Learning}: setting up experiments for women's health},
author = {Mercedes Arguello Casteleiro and Niamh Joyce and Nava Maroto and Maria Jesus Fernandez Prieto and Tim Furmston and Diego Maseda Fernandez and Phillip Lord and Chris Wroe and John Keane and Ying Cheong and Robert Stevens},
pages = {161--162},
url = {http://ceur-ws.org/Vol-3415/\#paper-39},
crossref = {SWAT4HCLS2023},
}

@inproceedings{VasileiouEtAl:SWAT4HCLS2023,
title = {An Explainable Intervention Prediction for Trauma Patients},
author = {Zoe Vasileiou and Georgios Meditskos and Stefanos Vrochidis and Nick Bassiliades},
pages = {163--164},
url = {http://ceur-ws.org/Vol-3415/\#paper-40},
crossref = {SWAT4HCLS2023},
}

@inproceedings{XiaoEtAl:SWAT4HCLS2023,
title = {{FHIR-Ontop-OMOP}: Querying {OMOP} clinical databases as {FHIR}-compliant Clinical Knowledge Graphs},
author = {Guohui Xiao and Emily Pfaff and Eric Prud'Hommeaux and David Booth and Deepak K. Sharma and Nan Huo and Yue Yu and Nansu Zong and Kathryn J. Ruddy and Christopher G. Chute and Guoqian Jiang},
pages = {165--166},
url = {http://ceur-ws.org/Vol-3415/\#paper-41},
crossref = {SWAT4HCLS2023},
}

@inproceedings{LarmandeEtAl:SWAT4HCLS2023,
title = {{AgroLD}: a Knowledge Graph for the Plant Sciences},
author = {Pierre Larmande and Bertrand Pitollat and Ndomassi Tando and Yann Pomie and Bill Happi and Valentin Guignon and Manuel Ruiz},
pages = {167--168},
url = {http://ceur-ws.org/Vol-3415/\#paper-42},
crossref = {SWAT4HCLS2023},
}

@inproceedings{SunEtAl:SWAT4HCLS2023,
title = {Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning},
author = {Chang Sun and Johan van Soest and Michel Dumontier},
pages = {169--170},
url = {http://ceur-ws.org/Vol-3415/\#paper-43},
crossref = {SWAT4HCLS2023},
}

@inproceedings{GrudzienEtAl:SWAT4HCLS2023,
title = {Managing food and microbiome studies data using {Fairspace}, a flexible and {FAIR} data management platform},
author = {Ewelina Grudzien and Eelke van der Horst and Frank van den Bergh and Maria H. Traka and Duncan Ng and Falk Hildebrand and Chris T. Evelo and Susan L. M. Coort and Duygu Dede {\c S}ener and Elisa Cirillo},
pages = {171--172},
url = {http://ceur-ws.org/Vol-3415/\#paper-44},
crossref = {SWAT4HCLS2023},
}

@inproceedings{LiakopoulousEtAl:SWAT4HCLS2023,
title = {Towards predicting essential proteins via federated {SPARQL} queries},
author = {Petros Liakopoulous and Borbala Banfalvi and Xinyi Wang and Sina Majidian and Tarcisio Mendes de Farias and Christophe Dessimoz and Ana Claudia Sima},
pages = {173--174},
url = {http://ceur-ws.org/Vol-3415/\#paper-45},
crossref = {SWAT4HCLS2023},
}

@inproceedings{LaneEtAl:SWAT4HCLS2023,
title = {A federated query between {neXtProt} and {OrthoDB} retrieves 44 uncharacterized human proteins highly expressed in the brain and conserved in {\emph {D}rosophila {m}elanogaster}},
author = {Lydie Lane and Kasun Samarasinghe and Pierre-Andr{'e} Michel},
pages = {175--176},
url = {http://ceur-ws.org/Vol-3415/\#paper-46},
crossref = {SWAT4HCLS2023},
}

@inproceedings{FariasEtAl:SWAT4HCLS2023,
title = {Data in use for {Alzheimer} disease study: combining gene expression, orthology, bioresource and disease datasets},
author = {Tarcisio Mendes de Farias and Tatsuya Kushida and Ana Claudia Sima and Christophe Dessimoz and Hirokazu Chiba and Fr{'e}d{'e}ric Bastian and Hiroshi Masuya},
pages = {177--178},
url = {http://ceur-ws.org/Vol-3415/\#paper-47},
crossref = {SWAT4HCLS2023},
}

@inproceedings{HayesEtAl:SWAT4HCLS2023,
title = {Linking glycan and protein data},
author = {Catherine Hayes and Vincenzo Daponte and Frederique Lisacek},
pages = {179--180},
url = {http://ceur-ws.org/Vol-3415/\#paper-48},
crossref = {SWAT4HCLS2023},
}

@inproceedings{GehantEtAl:SWAT4HCLS2023,
title = {{UniProt}, {ChEBI} and {IDSM Sachem}: exploring biologically relevant ligands},
author = {Sebastien Gehant and Elisabeth Coudert and Anne Morgat and Jerven Bolleman and Nicole Redaschi and Alan Bridge and {UniProt Consortium}},
pages = {181--183},
url = {http://ceur-ws.org/Vol-3415/\#paper-49},
crossref = {SWAT4HCLS2023},
}

@proceedings{SWAT4HCLS2023,
booktitle = {14th International Conference on Semantic Web Applications and Tools for Health Care
              and Life Sciences ({SWAT4HCLS})},
title = {Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care
              and Life Sciences ({SWAT4HCLS})},
year = 2023,
editor = {Atsuko Yamaguchi and Andrea Splendiani and M. Scott Marshall and Chris Baker and Jerven Bolleman and Albert Burger and Leyla Jael Castro and Ole Eigenbrod and Sabine {\"O}sterle and Martin Romacker and Andra Waagmeester},
number = 3415,
series = {CEUR Workshop Proceedings},
address = {Aachen},
issn = {1613-0073},
url = {http://ceur-ws.org/Vol-3415/},
venue = {Basel, Switzerland},
eventdate = {2023-02-13/2023-02-16},
}

